@USMC86, your problem is not the same. You didn't load the parameter files.
@David Boulanger The logs just stop shortly after you takeoff. They show no errors or failures. They just stop in mid-air. This usually indicates a sudden loss of electrical power, or that the pixhawk just shut down. I also see "long loop" errors in the log analyzer, which I think should never happen. That indicates some code in ArduCopter is dragging it's feet slowing the processor down. In 5 years, I've never seen that. This leads me to believe the FW installed on the Pixhawk may just be corrupt.
1. Install the Wipe package in Solex and reboot. It will install and do it's beeping and boopping thing.
2. Install the ArduCopter 3.5.3 package in solex and reboot. Again it will beep and boop
3. Install the ArduCopter 3.5.x parameters package in Solex. Also install the Here and landing gear if you have any of those modes. Reboot.
4. Recalibrate as usual since everything is wiped out.
5. Do a low and slow test flight and shoot some logs over.
I suspect that will take care of it.