If you set the motor test to 5%, you'll hear multiple tones from the motors. All tones are a motor drive pulses. There are two blips towards the last of the 5 or 6 tones. Same tones before the final tone. When you drive up the motors to 50% we stop hearing these tones, for the most part. But they are still there, we've just upped the throttle. Those pulses can be seen in the recorded data if your looking for them. Anyway, the point is to run your test for at least 7 seconds, 10 would be better if your visually watching the sine wave. You really want to capture seconds 2-4 of a 7 second sequence, the clear motor run pulse. Play around with the 5% setting to locate the no tone zone.
More than you wanted to know I'm sure, just run the motor test longer than two seconds to get a smooth sequence to sample. And then just sample for two seconds....
Are you confused yet?